Thiols

Thiols, also called mercaptans, are sulfur analogs of alcohols. They are named by the same system used for alcohols, with the suffix –thiol used in place of –ol. The –SH group itself is referred to as a mercapto group. Like alcohols, thiols are weakly acidic; the pK_a of CH₃SH, for instance, is 10.3. Unlike alcohols, however, thiols don’t typically form hydrogen bonds because the sulfur atom is not sufficiently electronegative.

The most striking characteristic of thiols is their appalling odor. Skunk scent, for instance, is caused primarily by the simple thiols 3-methyl-1-butanethiol and 2-butene-1-thiol.

Volatile thiols such as ethanethiol are also added to natural gas and liquefied propane to serve as an easily detectable warning in case of leaks.

Thiols are usually prepared from alkyl halides by S_N2 displacement with a sulfur nucleophile such as hydrosulfide anion, HS^–.

The reaction often works poorly unless an excess of the nucleophile is used because the product thiol can undergo a second S_N2 reaction with alkyl halide to give a sulfide (R–S–Rʹ) as by-product. To circumvent this problem, thiourea, (NH₂)₂C═S, is often used as the nucleophile in the preparation of a thiol from an alkyl halide. The reaction occurs by displacement of the halide ion to yield an intermediate alkyl isothiourea salt, which is hydrolyzed by subsequent reaction with aqueous base.

Thiols can be oxidized by Br₂ or I₂ to yield disulfides (R–S–S–R′). The reaction is easily reversed, and a disulfide can be reduced back to a thiol by treatment with zinc and acid.

This thiol–disulfide interconversion is a key part of numerous biological processes. We’ll see in Chapter 26, for instance, that disulfide formation is involved in defining the structure and three-dimensional conformations of proteins, where disulfide “bridges” often form cross-links between cysteine amino-acid units in the protein chains. Disulfide formation is also involved in the process by which cells protect themselves from oxidative degradation. A cellular component called glutathione removes potentially harmful oxidants and is itself oxidized to glutathione disulfide in the process. Reduction back to the thiol requires the coenzyme reduced flavin adenine dinucleotide, abbreviated FADH₂.

Sulfides

Sulfides are the sulfur analogs of ethers, just as thiols are the sulfur analogs of alcohols. Sulfides are named by following the same rules used for ethers, with sulfide used in place of ether for simple compounds and alkylthio used in place of alkoxy for more complex substances.

Treatment of a thiol with a base, such as NaH, gives the corresponding thiolate ion (RS^–), which undergoes reaction with a primary or secondary alkyl halide to give a sulfide. The reaction occurs by an S_N2 mechanism, analogous to the Williamson synthesis of ethers (Section 18.2).

Despite their close structural similarity, sulfides and ethers differ substantially in their chemistry. Because the valence electrons on sulfur are farther from the nucleus and are less tightly held than those on oxygen (3p electrons versus 2p electrons), sulfur compounds are more nucleophilic than their oxygen analogs. Unlike dialkyl ethers, dialkyl sulfides react rapidly with primary alkyl halides by an S_N2 mechanism to give sulfonium ions (R₃S⁺).

The most common example of this process in living organisms is the reaction of the amino acid methionine with adenosine triphosphate (ATP; Section 6.8) to give S-adenosylmethionine. The reaction is somewhat unusual in that the biological leaving group in this S_N2 process is the triphosphate ion rather than the more frequently seen diphosphate ion (Section 11.6).

Sulfonium ions are themselves useful alkylating agents because a nucleophile can attack one of the groups bonded to the positively charged sulfur, displacing a neutral sulfide as leaving group. We saw an example of this in Section 11.6 (Figure 11.17), in which S-adenosylmethionine transferred a methyl group to norepinephrine to give adrenaline.

Another difference between sulfides and ethers is that sulfides are easily oxidized. Treatment of a sulfide with hydrogen peroxide, H₂O₂, at room temperature yields the corresponding sulfoxide (R₂SO), and further oxidation of the sulfoxide with a peroxyacid yields a sulfone (R₂SO₂).

Dimethyl sulfoxide (DMSO) is a particularly well-known sulfoxide that is often used as a polar aprotic solvent. It must be handled with care, however, because it has a remarkable ability to penetrate the skin, carrying along whatever is dissolved in it.

Problem 18-16

Name the following compounds:

(a)

    

(b)

(c)

(d)

(e)

(f)

Problem 18-17

2-Butene-1-thiol is one component of skunk spray. How would you synthesize this substance (either cis or trans) from methyl 2-butenoate? From 1,3-butadiene?