Contents

  1. Metagenomics

    Carlos Goller

  2. Course Goals and Learning Objectives

    Carlos Goller

  3. I. Fall 2019: Investigating the Microbial Communities in Mortality Composts

    1. 1. Chapter 1: What is metagenomics? Introduction to questions and methods.

      BIT 477/577 Fall 2019 Students and Carlos Goller

    2. 2. Chapter 2: What is diversity? Different metrics.

      BIT 477/577 Fall 2019 Students and Carlos Goller

    3. 3. Chapter 3: What pipelines are available? Pipelines and computational resources.

      BIT 477/577 Fall 2019 Students and Carlos Goller

    4. 4. Chapter 4. What are OTUs and ASVs? Introduction to QIIME environment and DADA2.

      BIT 477/577 Fall 2019 Students and Carlos Goller

    5. 5. Chapter 5: How can we plot this? Data visualization with R.

      BIT 477/577 Fall 2019 Students and Carlos Goller

    6. 6. Chapter 6: How certain are we? Methods and statistics found in selected papers.

      BIT 477/577 Fall 2019 Students and Carlos Goller

    7. 7. Chapter 7: Readings, Annotations, and Summaries

      BIT 477/577 Fall 2019 Students and Carlos Goller

  4. II. Fall 2020: Investigating Microbial Communities

    1. 8. Module 2: What are MAGs? Whole metagenome sequencing and analysis.

      BIT 477/577 Fall 2020 Students

    2. 9. Module 3: What is diversity? Different metrics.

      BIT 477/577 Fall 2020 Students

    3. 10. Module 4: What pipelines are available? Pipelines and computational resources.

      BIT 477/577 Fall 2020 Students

    4. 11. Module 5: What are OTUs and ASVs? Introduction to QIIME environment and DADA2.

      BIT 477/577 Fall 2020 Students

    5. 12. Module 6: How can we plot this? How certain are we? Data visualization and statistics.

      BIT 477/577 Fall 2020 Students

    6. 13. Module 7: What did we discover? Project presentations and podcasts.

      BIT 477/577 Fall 2020 Students

    7. 14. Module 1: What is metagenomics? Introduction to topic and methods.

      BIT 477/577 Fall 2020 Students

  5. Appendix