Metagenomics
Carlos Goller
Course Goals and Learning Objectives
1. Chapter 1: What is metagenomics? Introduction to questions and methods.
BIT 477/577 Fall 2019 Students and Carlos Goller
2. Chapter 2: What is diversity? Different metrics.
3. Chapter 3: What pipelines are available? Pipelines and computational resources.
4. Chapter 4. What are OTUs and ASVs? Introduction to QIIME environment and DADA2.
5. Chapter 5: How can we plot this? Data visualization with R.
6. Chapter 6: How certain are we? Methods and statistics found in selected papers.
7. Chapter 7: Readings, Annotations, and Summaries
8. Module 2: What are MAGs? Whole metagenome sequencing and analysis.
BIT 477/577 Fall 2020 Students
9. Module 3: What is diversity? Different metrics.
10. Module 4: What pipelines are available? Pipelines and computational resources.
11. Module 5: What are OTUs and ASVs? Introduction to QIIME environment and DADA2.
12. Module 6: How can we plot this? How certain are we? Data visualization and statistics.
13. Module 7: What did we discover? Project presentations and podcasts.
14. Module 1: What is metagenomics? Introduction to topic and methods.
Appendix